PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G29030.1
Common NameLOC102721656
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 299aa    MW: 30894.1 Da    PI: 10.1592
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G29030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.8e-073458226
                  -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                  k ++C  f+ t  C++G++C+F H 
  OB06G29030.1 34 KLKPCTKFFSTSGCPFGSSCHFLHN 58
                  6689********************7 PP

2zf-CCCH20.11.2e-06100125227
                   -S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                   kt+ C+ +     Ck G++C+FaHg+
  OB06G29030.1 100 KTRMCNKYNTAEGCKWGSKCHFAHGE 125
                   89**********************96 PP

3zf-CCCH36.67.7e-12265290127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +kt+lC +f + G C +GdrC+FaHg+
  OB06G29030.1 265 FKTKLCENFNK-GSCTFGDRCHFAHGE 290
                   69*********.*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7933260IPR000571Zinc finger, CCCH-type
SMARTSM003560.083259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-83458IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-53458IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-63460IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-1495130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-898129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.72798126IPR000571Zinc finger, CCCH-type
SMARTSM003560.9798125IPR000571Zinc finger, CCCH-type
SMARTSM003221.8E-10168238IPR004087K Homology domain
PROSITE profilePS5008414.508169233IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-14169237IPR004088K Homology domain, type 1
CDDcd001052.99E-13171233No hitNo description
SuperFamilySSF547911.02E-14171264IPR004088K Homology domain, type 1
PfamPF000138.0E-11171234IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.1E-16262295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131264291IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7264290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-9264294IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9265290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEAGGKRASA EGANGVAAKR ARASESSQMG VGSKLKPCTK FFSTSGCPFG SSCHFLHNFP  60
GGYQAVAKMA NLGGPAVAAP PGRMPLGLGA PNGPPTSSVK TRMCNKYNTA EGCKWGSKCH  120
FAHGERELGK PMQLDNSMPR AMGSIPNGQF EAPPMPGPDI VPPSTFGASA TAKISVDASL  180
AGGIIGKGGV NTKHISRMTG AKLAIRDNES NPNLKNIELE GTFDQIKHAS AMVTELIVRI  240
SGNTNAPPAK NPGRGSHAGG PGSNFKTKLC ENFNKGSCTF GDRCHFAHGE SELRKSAAA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036090.0AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657138.10.0PREDICTED: zinc finger CCCH domain-containing protein 44
SwissprotQ69XQ30.0C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLJ3MFV90.0J3MFV9_ORYBR; Uncharacterized protein
STRINGOB06G29030.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-73C3H family protein